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[Rp] Structural flexibility in proteins - impact of the crystal environment

A Python reproduction concerning protein structural flexibility and the effect of a crystal environment on normal-mode calculations.

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External publication. Published by its original venue; not published in our journal.

A QUESTION TO TAKE FURTHER

Which low-dimensional synthetic stiffness model can test eigenmode normalization and environment sensitivity independently?

The evaluator checks symmetry, eigenpair residuals and mode orthogonality on synthetic matrices; these checks do not validate a protein structure or experiment.

What you could produce

  • Versioned protocol, input and environment manifest, and independent per-case comparison table including uncertainty and incomplete cases.

Before you use it

  • Exact article-specific dependencies, data and build requirements remain uninspected.

Limits to keep in view

  • No research code was executed; no independent scientific verification has been performed.
  • The current qualified pilot is self-contained Python 3.13 with a 90-second author deadline. This article's environment has not been qualified for that path.
  • Published source metadata and a historical review do not establish compatibility, successful reproduction, operator independence or current scientific correctness.

Source and permission context

Hinsen, Konrad. [Rp] Structural flexibility in proteins - impact of the crystal environment. ReScience C 6(1), #5; 10.5281/zenodo.3886447.

Catalog listing reviewed. This review covers the description and source links displayed here.

ReScience/Zenodo metadata reviewed; exact CC-BY-4.0 evidence is manuscript-scoped.

Reviewed 2026-09-14. Copying or adapting source files remains subject to their own terms.

manuscript · CC-BY-4.0

The exact Zenodo record cited by the journal declares cc-by-4.0; the journal separately identifies published manuscripts as CC BY. This records manuscript rights, not separate code/data licenses or archive contents.

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  • The associated code's exact license and version-specific third-party notices have not been independently checked.
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  • Artifacts are referenced only; PDF/archive contents, dependency locks and bytes have not been inspected or executed.